antimicrobial resistance – Artifex.News https://artifexnews.net Stay Connected. Stay Informed. Thu, 13 Jun 2024 17:31:04 +0000 en-US hourly 1 https://wordpress.org/?v=6.6.2 https://artifexnews.net/wp-content/uploads/2023/08/cropped-Artifex-Round-32x32.png antimicrobial resistance – Artifex.News https://artifexnews.net 32 32 Rapid, diagnostic test for UTIs may help stem super bug crisis https://artifexnews.net/article68284305-ece/ Thu, 13 Jun 2024 17:31:04 +0000 https://artifexnews.net/article68284305-ece/ Read More “Rapid, diagnostic test for UTIs may help stem super bug crisis” »

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This week a prize was announced that is likely to have far-reaching implications in the world of health care. Despite its importance most of the community is unaware of the event. The winner of the Longitude prize is poised to spearhead a revolution in the field of infection management and global efforts to tackle antimicrobial resistance. The £8million ( ₹85 crore) Longitude Prize on Antimicrobial resistance (AMR), first announced in 2014, revealed its winner at an event in London’s Science Museum. The PA-100 AST System from Sysmex Astrego is a high-tech, transformative, rapid, point-of-care test for UTIs (Urinary Tract Infection).

Rational use of antibiotics — choosing the appropriate antibiotic for the correct patient at the optimal time — is fundamental in saving lives and combating the superbug crisis. Rapid diagnostics are poised to be crucial in this effort. The winner of the Longitude Prize is set to spearhead the list of emerging rapid diagnostic technologies in a transformative manner. The applications for the Longitude Prize bring hope, suggesting that through collective action, we can look forward to a future protected from the threats of antimicrobial resistance.

The crisis is imminent: Antibiotic-resistant infections killed nearly 1.3 million people globally in 2019 and are on course to cause 10 million deaths a year by 2050, outstripping deaths caused by cancer. The global economy may lose up to 4 trillions by 2030 and up to 100 trillions by 2050 due to the AMR crisis.

What does the prize mean?

Most advanced tests in medical practice today are PCR-based, but the PA-100 AST System from Sysmex Astrego has developed a transformative technology based on a phenotypic test. This test identifies the bacteria causing the urinary tract infection and performs antibiotic susceptibility testing (AST) to determine the effective antibiotic for the specific patient in under 45 minutes.

The test uses a single-use cartridge, the size of a smart phone. Less than half a millilitre of the urine is added to this cartridge. Bacteria in the urine is trapped in over 10,000 microfluidic traps in parallel arrays and exposed to five different antibiotics at five different concentrations. The cartridge is inserted into a reader instrument, the size of a shoe box, where bacterial growth is monitored by phase-contrast imaging. The reader provides a report , “sensitive” or “resistant” for each antibiotic in 30-45 minutes. This supports doctors and health workers in their clinical decision making at the point of care, and opens up the significant possibility of previously “retired” first-line antibiotics coming back into use for the majority of patients.. Accurate, rapid diagnosis of bacterial infections that help doctors and health workers manage and target antibiotics, will slow the development and spread of antibiotic resistant infections, improve healthcare and save potentially millions of lives.

The test represents a huge advance over the current turnaround time of 2-3 days. The test will help doctors prescribe the right antibiotic at the right time, rather than waiting for 3 days and resorting to empirical antibiotic prescription. The test can be performed in a doctors clinic rather than sending the urine sample to a laboratory. When a patient with symptoms of urinary infection visits a doctor, if the new technology is used , the doctor will know within 45 minutes ,whether the patient has urinary infection or not and if there is an infection which antibiotic will work. The test is transformative, accurate, and affordable for patients worldwide.

Currently there are two types of tests available to diagnose urinary infection.

The first one is the urine dipstick test that can be done as a point-of-care test. Point-of-care diagnostic tests are tests that can be performed in the clinic, emergency departments, hospital wards, or pharmacy counters, without the need to send the sample to a laboratory. The advantage of the dipstick is that results are available in a couple of minutes, which helps doctors decide whether to start antibiotics or not. Unfortunately accuracy is not more than 50-60%. Even if the doctor carries out a dipstick despite its limitations, the test doesn’t help the doctor choose the right antibiotic.

For this, the urine sample must be sent to the laboratory for culture. The culture results take a minimum of 2-3 days. But the doctor cannot wait 2-3 days to start an antibiotic. So, even if the doctor sends a urine sample for culture, they still have to start an antibiotic empirically, based on educated guesswork, before the culture results are ready. By this time, the patient has already completed a full or half course of antibiotics. Such blind antibiotic prescriptions are a major cause of the antibiotic resistance crisis, especially in countries like India. A transformative, rapid point of care diagnostic test that is accurate and affordable has the potential to revolutionise urinary tract infection treatment in India and worldwide. Current urinary tract infection management in most cases is based on a 50:50 rationale. Only 50% of patients with symptoms of urinary infection have an actual infection, and the accuracy of a urine dipstick is 50-60%.

In India, every year, millions of patients with urinary tract infections visit doctors or pharmacies seeking treatment. These infections result in significant loss of lives, burden the healthcare system, and have a socio-economic impact. In 20-30% of sepsis patients, the infection originates from the urinary tract. Up to two in five people who develop severe sepsis will lose their lives. Hence, rapid and accurate point-of-care tests for urinary tract infection can save millions of lives worldwide, especially in India. The solution is a rapid, accurate, and affordable test that can help the doctor diagnose urinary infection accurately and provide information on the correct antibiotic that can cure the infection.

What is the Longitude Prize?

In 1714, the British government announced the Longitude Prize to solve the longitude problem, literally. In the 18th century, thousands of ships were lost at sea because sailors couldn’t determine the position of the ship at sea. If a ship doesn’t know where it is, it risks being shipwrecked.

To determine the position of a ship, both latitude and longitude are needed. Latitude was easy to measure by observing the sun, moon, and stars, but longitude was a mystery. The British government announced the Longitude Prize for an invention that helps calculate longitude. John Harrison, a watchmaker, invented an ingenious device that could calculate longitude perfectly and won the prize.

300 years after the first Longitude Prize, the Britain launched a second Longitude Prize. The public was asked to vote for a major challenge that needed an immediate solution, such as global warming, food shortage, and water shortage. The public voted for Anti Microbial Resistance. A ten million pound Longitude Prize was announced in 2014. Of this, £ 2 million was awarded to various innovators to refine their technology. The final winner receives £ 8 million.

The Longitude Prize on AMR intends to incentivise the creation of new diagnostic tests that, in a matter of minutes, can identify whether an infection is bacterial, and if so, the right antibiotic to prescribe to slow the spread of antibiotic resistant infections. The goal is to replace the 2–3-day lab test process that doctors and patients must currently endure, and end “just in case” prescribing that is prevalent as a result, which promotes the development of antibiotic resistance.



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How the Widal test is clouding India’s sense of its typhoid problem | Explained https://artifexnews.net/article68152863-ece/ Thu, 09 May 2024 02:55:00 +0000 https://artifexnews.net/article68152863-ece/ Read More “How the Widal test is clouding India’s sense of its typhoid problem | Explained” »

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More often than not, the experience for patients with a fever is to get tested and treated for a typhoid infection. The test is a rapid blood test called the Widal test. The subsequent treatment usually consists of tablets, typically in urban areas, or injections in rural ones.

Typhoid spreads through contaminated food and water and is caused by Salmonella typhiand other related bacteria. Also known as enteric fever, it presents with a high fever, stomach pain, weakness, and other symptoms like nausea, vomiting, diarrhoea or constipation, and a rash. Some people, called carriers, may remain symptom-free and shed the bacteria in their stool for several months to years.

These symptoms mimic those of malaria, dengue, influenza, and typhus, to name a few, each with different treatment modalities. If left untreated, typhoid can be life-threatening. Per the World Health Organisation, 90 lakh people are diagnosed worldwide with typhoid every year and 1.1 lakh die of it. A small 2023 study reported the burden to be 576-1173 cases per 100,000 child-years (one child year is one child being followed up for one year) in urban areas and 35 per 100,000 child years in rural Pune.

How is typhoid fever diagnosed?

The gold standard for diagnosing typhoid — in addition to a detailed medical history and a thorough examination — is to isolate the bacteria from a patient’s blood or bone marrow and grow them in the lab. Stool and urine samples can also yield the same but with lower sensitivity.

However, performing culture tests in smaller clinical settings presents practical problems. Cultures are time-consuming and skill- and resource-intensive. Prior antibiotic treatment can also affect the results of cultures — a common issue due to the indiscriminate use of antibiotics in India. Some PCR-based molecular methods are known to be better but are limited by cost; the need for specialised infrastructure and skilled personnel; and the inability to retrieve live bacteria for further tests.

Against this backdrop, in India, clinicians use the Widal test extensively to diagnose typhoid in both public and private sectors.

As with other infections, our immune system produces antibodies in the blood against the bacteria, causing enteric fever. The Widal test rapidly detects and quantifies these antibodies. It’s a point-of-care test and doesn’t need special skills or infrastructure. Developed in the late 1800s by a French physician, it is no longer used in many countries because of its flaws — flaws that are rendered by the scale of the test’s use in India to be abusive.

Why is the Widal test inappropriate?

A single positive Widal test report doesn’t necessarily mean a typhoid infection is present, and a negative report doesn’t confirm the disease’s absence. To diagnose an active infection, clinicians must test at least two serum samples taken at least 7-14 days apart, so that they may detect a change in concentrations of the antibodies. But getting two samples is rarely feasible and time-consuming.

Second, in areas with high and continuous typhoid burden, certain levels of antibodies against the bacteria may already be present in the blood. Without knowing the baseline cut-off, it isn’t possible to correctly interpret the test. A related issue is that different manufacturers of the test specify different cut-off values in their kits’ user manuals.

Third, the reagents used in the Widal test to reveal the presence of various antibodies can cross-react with antibodies produced against infections by other bacteria, viruses or parasites, or even in typhoid-vaccinated individuals, leading to false positives. Prior antibiotic therapy can also affect antibody levels and yield a false negative.

Correct diagnosis and appropriate treatment of enteric fever are important because serious complications, like severe intestinal bleeding or perforation, can develop within a few weeks if the disease is mismanaged. False negatives can thus delay diagnosis and lead to fatal outcomes.

What are the consequences of the test’s use?

Because of the Widal test’s propensity for erroneous results, the actual burden of typhoid in India remains obfuscated. A lack of awareness of the proper time at which to collect a blood sample, along with a lack of standardisation of kits and poor quality-control compound the problem.

Further, a single test costs a couple hundred rupees. Patients in many States have also reported being charged Rs 500 to Rs 4,000 per dose of antibiotic injections by local healthcare providers following a typhoid diagnosis based on a single Widal test. Patients in both urban and rural areas have reported selling assets to receive these antibiotics.

The irrational use of antibiotics is a major cause of antimicrobial resistance (AMR). Bacteria have also been known to be able to transmit AMR between strains and species, and they are not limited by geographical borders. This is why the threat of AMR in one country represents the threat of AMR everywhere. Some strains of Salmonella are also resistant to multiple drugs. Continued irrational use of the Widal test, which facilitates unnecessary use of antibiotics, will therefore only make it more and more difficult to control this preventable disease while adding to the financial woes of the patients already suffering.

What do we need instead of the Widal test?

We need to discover better point-of-care tests that can replace the Widal test. And until they’re available, clinicians can consider using best-practice heuristics that provide a rational diagnosis and subsequent treatment options based on the regional data of effective antibiotics available against the bacteria.

These options should be coupled with ensuring adequate and safe food and water and functional sanitation to address the disease’s root cause.

Improving access to better diagnostic tests could also address this problem. Doing a blood or bone marrow culture is often not feasible as it requires laboratory infrastructure that most parts of the country lack. Healthcare workers can instead benefit from a ‘hub and spoke’ model, with sample collection sites at the periphery and district hospitals and medical colleges as the hubs that process samples. The latter facilities could also serve as research centres that generate regional prevalence and susceptibility data.

Next, we need better surveillance to stay on top of the AMR caused by the overuse of the Widal test. The Indian Council for Medical Research publishes an annual report highlighting the typhoid bacteria’s resistance patterns. As per the last report, in 2021, the number of samples tested to report susceptibility ranged from one from the ‘East’ region to 126 samples from the ‘North’.

Finally, as typhoid also has symptom-free carriers, constant environmental vigilance and data-sharing are imperative.

Dr. Vasundhara Rangaswamy is a microbiologist and a rural physician. Dr. Parth Sharma is a public health physician, writer, and researcher.



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A computer science conundrum that could transform healthcare https://artifexnews.net/article68131538-ece/ Fri, 03 May 2024 00:00:00 +0000 https://artifexnews.net/article68131538-ece/ Read More “A computer science conundrum that could transform healthcare” »

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In the 17th century, a Dutch draper named Anton van Leeuwenhoek used a small handmade microscope to peer into a world previously unseen by the human eye. Thus he discovered microorganisms and gave rise to the field of microbiology. It offered solutions to challenges in healthcare that until then had seemed intractable.

Today, we face a new set of complex problems in healthcare that seem more intractable than others before for their inherent complexity and the constraints they threaten to impose on resources.

P versus NP

It so happens that an unsolved problem in computer science, simply called the P versus NP problem, could hold the key to these modern-day conundra. While it may sound like a cryptic puzzle reserved for computer science mavens, its implications stretch beyond algorithms and data structures, rippling through diverse fields including healthcare. But what exactly is this puzzle, and how could its resolution unlock a new era in medical science?

Let’s start with a simple arithmetic example. Say you’re asked to multiply 17 with 19. With some time, you’d arrive at the answer: 323. This is a ‘P’ problem: you can solve it reasonably quickly. (‘P’ stands for polynomial time.) Suppose you’re presented with 323 and asked to identify the two prime numbers multiplied to get this. In this case, you will have to take the trial and error route until you arrive at 17 and 19. This is an ‘NP’ problem: it takes longer to solve, but once you have the solution, you can verify it quickly. (‘NP’ here is nondeterministic polynomial time.)

Healthcare is filled with complex problems. Consider scheduling in a hospital: assigning doctors and nurses to shifts, booking operating theatres for surgeries, and organising patient appointments. It is an intricate puzzle that requires considering various factors — staff availability, urgency of medical cases, etc. — and potential changes such as emergency cases and cancellations.

The P vs NP question is this: could there be a shortcut to solve ‘NP’ problems as quickly as ‘P’ problems? Because the implication is that if P equals NP, we could quickly find the optimal solution to these scheduling problems, thus significantly improving patient care.

The implications of resolving this question are profound and wide-reaching, including for healthcare.

Implications for healthcare

The P vs NP question is a problem in mathematics and computer science, but that does not mean it will be confined there. If an existing problem can be given a faithful mathematical representation and is found to be an ‘NP’ problem, the shortcut in question could help by turning it into a ‘P’ problem.

For example, antibiotic resistance is a significant global health concern. If P equals NP, we may have a way to quickly analyse bacterial genomes and predict their resistance patterns, helping doctors prescribe the most effective antibiotics. This would improve patient outcomes and help combat antibiotic resistance, including new antibiotics discoveries for emerging diseases. Of course, patients’ adherence will still matter.

Cancer is a complex disease with myriad mutations. Deciding the best treatment plan is an NP problem because it involves considering all possible combinations of drugs and therapies. If P equals NP, we may have an opportunity to swiftly identify the optimal treatment for each individual cancer patient and potentially save many lives. The catch here is that we will still need a large volume of data.

Insurance companies grapple with NP problems when they have to determine premiums and packages based on considering numerous variables like age, health status, lifestyle, and medical history. Having a shortcut to crack the P vs NP problem could help these companies optimise their decision-making and pave the way to fairer and more accurate premiums and conditions. Further, government spending on healthcare can also be utilised with minimal leakage while programmes like Ayushman Bharath can contribute more effectively to achieving universal health coverage.

By solving these complex problems more efficiently, we could potentially dramatically reduce resource constraints and improve health outcomes.

Surprising sources of progress

While the P vs NP problem is a topic of ongoing study in computer science, the consensus among most experts is that P probably does not equal NP, implying that some problems will remain very difficult to crack, even if a solution — once it is found — will be easier to verify. But this has not deterred researchers from exploring this question, and in the pursuit of which they have unearthed improvements to algorithms and new approaches to dealing with complex problems.

Throughout history, there have been many instances of seemingly insurmountable problems being overcome with innovative thinking. Before the discovery of electricity, for example, candlemakers lit our world. Yet most of them may never have foreseen the revolutionary consequences of Thomas Edison’s incandescent bulb, which brought light to more people and for longer hours.

Similarly, following the invention of calculus and expanding the binomial theorem to negative integers and fractions, Isaac Newton considerably improved our understanding of the irrational number pi. Why, the technology giant Apple has been transforming our expectations of what a watch can be expected to do in ways that Swiss watchmakers may never have anticipated.

Not all will be winners

This said, one potential drawback of P being equal to NP, if ever that outcome comes to pass, lies in the realm of cryptography. Many encryption schemes and algorithms rely on problems that are currently hard to solve, believed to be in the set of ‘NP’, not ‘P’ problems. That is, these schemes protect secrets by hiding them behind a problem that is very hard to solve but easy to verify. If P equals NP, these problems will become easy to solve, rendering these encryption schemes vulnerable to attacks and compromising digital security.

This said, healthcare isn’t the sole beneficiary of this problem-solving. The barrier that the P vs NP problem stands for encompasses every field where the solution to a problem is blocked by the availability of significant computational resources. So these fields include logistics, finance, and even climate modelling, all of which could experience paradigm shifts if the P vs NP problem is solved in favour of the P = NP outcome.

The Clay Mathematics Institute in Colorado continues to offer a million dollars to anyone who can definitively solve the P vs NP problem. But for anyone who does, a million dollars will pale in comparison to the rewards they stand to collect by revolutionising various human enterprises, potentially driving human progress in unimaginable ways.

As we look to the future, let us remember that problems that seem insurmountable today might not be so tomorrow. As with the candlemakers, the watchmakers, and even Anton van Leeuwenhoek, the solution often comes from where we least expect it. Today’s brightest minds grappling with the P vs NP problem may be on the brink of a breakthrough that could redefine healthcare as we know it.

Dr C. Aravinda is a public health physician and student at IIT Madras pursuing a BS degree in data science.



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Indonesia’s low-cost watch on antimicrobial resistance https://artifexnews.net/article67269303-ece/ Mon, 04 Sep 2023 09:29:13 +0000 https://artifexnews.net/article67269303-ece/ Read More “Indonesia’s low-cost watch on antimicrobial resistance” »

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Indonesian researchers have tested a cheaper way of monitoring antimicrobial resistance that could be a key tool for developing countries. Image for Representation.
| Photo Credit: Getty Images/iStockphoto

Indonesian researchers have tested a cheaper way of monitoring antimicrobial resistance that could be a key tool for developing countries.

Indonesian researchers have tested a cost-effective, relatively quick method of measuring changes in antimicrobial resistance that could help developing countries fight a problem seen as a global threat.

Instead of sticking to an approach that emphasises the need for intensive laboratory testing that might not be practical in many countries, they assessed lot quality assurance sampling — a system where a population’s antimicrobial resistance can be assessed using smaller sample sizes.

That’s good news for the G20 after health ministers committed to tackling the threat comprehensively at their meeting last month. Antimicrobial resistance is the ability of microbes to block the effect of drugs that are meant to kill them. This makes infections harder to treat and can lead to longer hospital stays, more expensive care and increased risk of death.

The high level of antimicrobial resistance in Indonesia is now becoming a silent pandemic.

Explained | Is air pollution driving the rise of antibiotic resistance? 

The United Nations has warned the rise of ‘superbugs’ could kill 10 million people a year globally by 2050 and be a drain on the world economy. Like in many other countries, the improper use of antimicrobial drugs and other factors that trigger resistance, such as poor sanitation and air pollution, are prevalent in Indonesia. In 2015, the 68th World Health Assembly adopted the Global Action Plan on antimicrobial resistance.

It emphasises the importance of enhanced global surveillance, particularly in low- and middle-income countries where it is a major concern. One of the key pillars of the Global Action Plan is the support for national strategies through improved global surveillance.

The proposed global surveillance system aims to estimate the prevalence of resistance by using laboratory testing of clinical samples. However, this approach is not always practical in developing countries because of their limited access to quality microbiology diagnostics.

Population-based surveillance is a preferred strategy, but it is also time-consuming, labour-intensive and costly. That means many regions need a rapid, feasible and affordable surveillance strategy.

Explained | The challenge of antimicrobial resistance

Indonesian researchers found an alternative approach: they tried lot quality assurance sampling. This method, which was originally developed in the manufacturing industry to assess batch quality, involves classifying a population as having a high or low prevalence of antimicrobial resistance based on a small sample size.

It has proved to be more practical and cost-effective than conventional population-based surveillance. The Indonesian research applied the lot-based approach to assess the prevalence of antimicrobial resistance in patients with suspected urinary tract infections.

The researchers wanted to estimate the test characteristics for identifying populations with a high prevalence of resistance in urinary tract pathogens, provide lot-sampling classifications for 15 antibiotics in 11 different settings and estimate the cost of implementing lot sampling in a single health facility.

The testing was done in the Indonesian cities of Medan and Bandung, and the exercise was repeated 1,000 times for each of the 13 lots.

Also Read | Putting minds and funds together to find ways of tackling drug resistance 

They found lot testing was 98 percent effective in correctly identifying populations with a high prevalence of antimicrobial resistance.

Overall, the researchers were able to show that lot quality assurance sampling is a promising approach to efficiently estimate antimicrobial resistance prevalence and guide treatment decisions, especially in resource-limited settings.

By significantly reducing sample size requirements and increasing efficiency, lot-based surveillance could significantly contribute to public health efforts to combat antimicrobial resistance worldwide. The findings are particularly significant in the context of the growing importance of surveillance as a crucial tool for antimicrobial stewardship.

Previous studies on drug resistance have shown lot-based surveys are effective in identifying local variations in drug-resistant tuberculosis and assessing the prevalence of transmitted drug resistance in HIV.

This style of survey could be implemented at sentinel sites, enabling regular assessments of changing trends, intervention impacts, or early detection of resistance development after introducing new drugs. This utility is particularly beneficial in settings with limited microbiology capacity or where empirical treatment is common, such as primary care settings globally.

The cost of the lot-based surveys, including 15 antibiotics, ranged between US USD 403 and USD 514 in the 11 sites studied — relatively cheaper than conventional testing regimes. Despite some limitations, including the need for careful site selection and ensuring proper laboratory accreditation and quality control, lot quality assurance sampling shows promise in providing valuable information on antimicrobial resistance for both clinicians and policymakers.



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